| 1 (416) | Japan Meteorological Agency | JPN | | |
| 2 (459) | Japan Science & Technology Agency | JPN | | |
| 3 (642) | National Institute of Informatics | JPN | | |
| 4 (942) | National Astronomical Observatory of Japan * | JPN | | |
| 5 (959) | RIKEN-Institute of Physical and Chemical Research | JPN | | |
| 6 (1032) | National Institute for Environmental Studies | JPN | | |
| 7 (1275) | Japan Aerospace Exploration Agency | JPN | | |
| 8 (1287) | National Institute of Advanced Industrial Science & Technology | JPN | | |
| 9 (1565) | National Institute of Information and Communications Technology | JPN | | |
| 10 (1744) | National Agriculture and Food Research Organization | JPN | | |
| 11 (1797) | Forestry and Forest Products Research Institute | JPN | | |
| 12 (1926) | Japan International Research Center for Agricultural Sciences | JPN | | |
| 13 (2162) | Japan Atomic Energy Agency | JPN | | |
| 14 (2225) | Japan Agency for Marine-Earth Science and Technology | JPN | | |
| 15 (2284) | Japan Society for the Promotion of Science | JPN | | |
| 16 (2968) | National Research Institute for Earth Science and Disaster Prevention | JPN | | |
| 17 (3030) | National Institute for Materials Science | JPN | | |
| 18 (3882) | High Energy Accelerator Research Organization | JPN | | |
| 19 (4268) | National Institute of Polar Research | JPN | | |
| 20 (5138) | Meteorological Research Institute | JPN | | |
| 21 (5656) | National Institute for Fusion Science | JPN | | |
| 22 (5725) | National Institute for Physiological Science | JPN | | |
| 23 (5903) | The Institute of Statistical Mathematics | JPN | | |
| 24 (5954) | Institute for Molecular Science | JPN | | |
| 25 (6068) | Research Institute for Humanity and Nature | JPN | | |
| 25 (6068) | Hyogo Cancer Center | JPN | | |
| 27 (6412) | Advanced Telecommunications Research Institute International | JPN | | |
| 28 (8191) | Japan Synchrotron Radiation Research Institute | JPN | | |
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